Appendix B¶
In this appendix we present alphabetical list of CellG attributes:
clusterId - cluster id
clusterSurface - total surface of a cluster that a given cell belongs to. Needs ClusterSurface Plugin
ecc - eccentricity of cell . Needs MomentOfInertia plugin
extraAttribPtr - a C++ pointer to Python dictionary attached to each cell
flag - integer variable - unused. Can be used from Python
fluctAmpl - fluctuation amplitude. Default value is -1
iXX - xx component of inertia tensor. Needs MomentOfInertia Plugin
iXY- xy component of inertia tensor. Needs MomentOfInertia Plugin
iXZ- xz component of inertia tensor. Needs MomentOfInertia Plugin
iYY- yy component of inertia tensor. Needs MomentOfInertia Plugin
iYZ- yz component of inertia tensor. Needs MomentOfInertia Plugin
iZZ- zz component of inertia tensor. Needs MomentOfInertia Plugin
id - cell id
lX- x component of orientation vector. Set by MomentOfInertia
lY- y component of orientation vector. Set by MomentOfInertia
lZ- z component of orientation vector. Set by MomentOfInertia
lambdaClusterSurface - lambda (constraint strength) of cluster surface constraint.Needs ClusterSurface Plugin
lambdaSurface - lambda (constraint strength) of surface constraint. Needs Surface Plugin
lambdaVecX - x component of force applied to cell. Needs ExternalPotential Plugin
lambdaVecY - y component of force applied to cell. Needs ExternalPotential Plugin
lambdaVecZ - z component of force applied to cell. Needs ExternalPotential Plugin
lambdaVolume - lambda (constraint strength) of volume constraint. Needs Volume Plugin
subtype - currently unused
surface - instantaneous cell surface. Needs Surface or SurfaceTracker plugin
targetClusterSurface - target value of cluster surface constraint.Needs ClusterSurface Plugin
targetSurface - target value of surface constraint. Needs Surface Plugin
targetVolume - target value of volume constraint. Needs Volume Plugin
type - cell type
volume - instantaneous cell volume. Needs VolumeTracker plugin which is loaded by default by every CC3D simulation.
xCM - numerator of x-component expression for cell centroid
xCOM - x component of cell centroid
xCOMPrev - x component of cell centroid from previous MCS
yCM - numerator of y-component expression for cell centroid
yCOM - y component of cell centroid
yCOMPrev - y component of cell centroid from previous MCS
zCM - numerator of z-component expression for cell centroid
zCOM - z component of cell centroid
zCOMPrev - z component of cell centroid from previous MCS