Appendix B¶
In this appendix we present alphabetical list of CellG attributes:
clusterId`` - cluster id
clusterSurface
- total surface of a cluster that a given cell belongs
to. Needs ClusterSurface Plugin
ecc
- eccentricity of cell . Needs MomentOfInertia plugin
extraAttribPtr
- a C++ pointer to Python dictionary attached to each
cell
flag
- integer variable
- unused. Can be used from Python
fluctAmpl
- fluctuation amplitude. Default value is
-1
iXX
- xx component of inertia tensor. Needs MomentOfInertia Plugin
iXY
- xy component of inertia tensor. Needs MomentOfInertia Plugin
iXZ
- xz component of inertia tensor. Needs MomentOfInertia Plugin
iYY
- yy component of inertia tensor. Needs MomentOfInertia Plugin
iYZ
- yz component of inertia tensor. Needs MomentOfInertia Plugin
iZZ
- zz component of inertia tensor. Needs MomentOfInertia Plugin
id
- cell id
lX
- x component of orientation vector. Set by MomentOfInertia
lY
- y component of orientation vector. Set by MomentOfInertia
lZ
- z component of orientation vector. Set by MomentOfInertia
lambdaClusterSurface
- lambda (constraint strength) of cluster surface
constraint.Needs ClusterSurface Plugin
lambdaSurface
- lambda (constraint strength) of surface constraint.
Needs Surface Plugin
lambdaVecX
- x component of force applied to cell. Needs
ExternalPotential Plugin
lambdaVecY
- y component of force applied to cell. Needs
ExternalPotential Plugin
lambdaVecZ
- z component of force applied to cell. Needs
ExternalPotential Plugin
lambdaVolume
- lambda (constraint strength) of volume constraint. Needs
Volume Plugin
subtype
- currently unused
surface
- instantaneous cell surface. Needs Surface or SurfaceTracker
plugin
targetClusterSurface
- target value of cluster surface constraint.Needs
ClusterSurface Plugin
targetSurface
- target value of surface constraint. Needs Surface Plugin
targetVolume
- target value of volume constraint. Needs Volume Plugin
type
- cell type
volume
- instantaneous cell volume. Needs VolumeTracker plugin which is
loaded by default by every CC3D simulation.
xCM
- numerator of x-component expression for cell centroid
xCOM
- x component of cell centroid
xCOMPrev
- x component of cell centroid from previous MCS
yCM
- numerator of y-component expression for cell centroid
yCOM
- y component of cell centroid
yCOMPrev
- y component of cell centroid from previous MCS
zCM
- numerator of z-component expression for cell centroid
zCOM
- z component of cell centroid
zCOMPrev
- z component of cell centroid from previous MCS