python_scripting_manual
stable
  • Introduction
  • How to use Python in CompuCell3D
  • SteppableBasePy class
  • Adding Steppable to Simulation using Twedit++
  • Passing information between steppables
  • Creating and Deleting Cells. Cell Type Names
  • Calculating distances in CC3D simulations.
  • Looping over select cell types. Finding cell in the inventory.
  • Writing data files in the simulation output directory.
  • Adding plots to the simulation
  • Custom Cell Attributes in Python
  • Adding and managing extra fields for visualization purposes
  • Automatic Tracking of Cells’ Attributes
  • Field Secretion
  • Chemotaxis on a cell-by-cell basis
  • Steering – changing CC3DML parameters on-the-fly.
  • Steering – changing Python parameters using Graphical User Interface.
  • Replacing CC3DML with equivalent Python syntax
  • Cell Motility. Applying force to cells.
  • Setting cell membrane fluctuation ona cell-by-cell basis
  • Modifying attributes of CellG object
  • Controling steppable call frequency. Stopping simulation on demand or increasing maximum Monte Carlo Step.
  • Building a wall (it is going to be terrific. Believe me)
  • Resizing the lattice
  • Changing number of Worknodes
  • Iterating over cell neighbors
  • Mitosis
  • Dividing Clusters (aka compartmental cells)
  • Changing cluster id of a cell.
  • SBML Solver
  • Building SBML models using Tellurium
  • Configuring Multiple Screenshots
  • Parameter Scans
  • Restarting Simulations
  • Implementing Energy Functions in Python
  • Appendix A
  • Appendix B
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© Copyright 2017, Maciej Swat, Julio Belmonte Revision b3085df9.

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